Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
CUTLL1
NA
NA

Attributes by original data submitter

Sample

source_name
T-ALL Cell line
cell line
CUTLL1
disease state
T-ALL
treatment
gSI (1uM)
chip antibody
CTCF (D31H2; Catalog no: 3418)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. libraries were prepared using Kapa Hyper prep kit (Catalog no: KK8500) following manufacturer's guidelines

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
38777963
Reads aligned (%)
85.4
Duplicates removed (%)
13.1
Number of peaks
29701 (qval < 1E-05)

hg38

Number of total reads
38777963
Reads aligned (%)
87.4
Duplicates removed (%)
11.8
Number of peaks
29603 (qval < 1E-05)

Base call quality data from DBCLS SRA