Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Peripheral blood T cells
tissue
Peripheral blood
disease state
Healthy T cells
treatment
N/A
chip antibody
CTCF (D31H2; Catalog no: 3418)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. libraries were prepared using Kapa Hyper prep kit (Catalog no: KK8500) following manufacturer's guidelines

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
29065013
Reads aligned (%)
27.0
Duplicates removed (%)
70.5
Number of peaks
26967 (qval < 1E-05)

hg38

Number of total reads
29065013
Reads aligned (%)
27.6
Duplicates removed (%)
69.9
Number of peaks
26795 (qval < 1E-05)

Base call quality data from DBCLS SRA