Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
Monocytes
MeSH Description
Large, phagocytic mononuclear leukocytes produced in the vertebrate BONE MARROW and released into the BLOOD; contain a large, oval or somewhat indented nucleus surrounded by voluminous cytoplasm and numerous organelles.

Attributes by original data submitter

Sample

source_name
Monocytes
cell type
monocyte
chip antibody
H3K4me3 (Diagenode; #pAb-003-050)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to the Illumina TruSeq protocol, and quality assessed by Agilent 2100 BioAnalyzer.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
87138107
Reads aligned (%)
98.8
Duplicates removed (%)
2.5
Number of peaks
45499 (qval < 1E-05)

hg19

Number of total reads
87138107
Reads aligned (%)
98.0
Duplicates removed (%)
2.8
Number of peaks
44152 (qval < 1E-05)

Base call quality data from DBCLS SRA