Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

source_name
Lymphoblastoid cell lines
cell type
lymphoblastic cell line
chip antibody
H3K4me3 (Diagenode; #pAb-003-050)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to the Illumina TruSeq protocol, and quality assessed by Agilent 2100 BioAnalyzer.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
32875468
Reads aligned (%)
96.9
Duplicates removed (%)
1.1
Number of peaks
46020 (qval < 1E-05)

hg19

Number of total reads
32875468
Reads aligned (%)
96.3
Duplicates removed (%)
1.1
Number of peaks
47142 (qval < 1E-05)

Base call quality data from DBCLS SRA