Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
T-ALL
NA
NA

Attributes by original data submitter

Sample

source_name
T-ALL cancer sample_input
cell type
Lymphocytes
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin Immunoprecipitation with antibodies against specific histone modifications. Libraries were prepared according to manufacturer's instructions using Illumina TrueSeq ChIP-seq Library Preparation Kit (Ref # 15034288). At least 1ng DNA was used for each library preparation.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
48682824
Reads aligned (%)
87.7
Duplicates removed (%)
31.6
Number of peaks
1056 (qval < 1E-05)

hg19

Number of total reads
48682824
Reads aligned (%)
86.8
Duplicates removed (%)
33.5
Number of peaks
1243 (qval < 1E-05)

Base call quality data from DBCLS SRA