Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Spi1

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

source_name
mouse
tissue
spleen
genotype
Stag2 WT
chip antibody
Santa Cruz sc-352

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq libraries were constructed with the NEBNext ChIP-seq library prep kit following the manufacturer's recommended protocol (New England Biolabs, Ipswich, MA, USA).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
16735338
Reads aligned (%)
68.2
Duplicates removed (%)
42.7
Number of peaks
2378 (qval < 1E-05)

mm9

Number of total reads
16735338
Reads aligned (%)
67.9
Duplicates removed (%)
44.2
Number of peaks
2367 (qval < 1E-05)

Base call quality data from DBCLS SRA