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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Nlrc5
wikigenes
PDBj
CellType: T cells
ATCC
MeSH
RIKEN BRC
SRX646162
GSM1427344: C WT; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Nlrc5
Cell type
Cell type Class
Blood
Cell type
T cells
NA
NA
Attributes by original data submitter
Sample
source_name
WT T-cells
strain
C57Bl/6 (H2b) background
cell type
T-cells
genotype/variation
WT
chip antibody
Rabbit polyclonal anti-mouse NLRC5 (aa 1–139) custom antibody generated by Adipogen
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatine was isolated, fragmented by sonication and immunoprecipitated it with anti Nlrc5 antibody Libraries were prepared according to Illumina's instructions using the Truseq ChIP-seq protocol.
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
30000000
Reads aligned (%)
89.5
Duplicates removed (%)
22.9
Number of peaks
421 (qval < 1E-05)
mm9
Number of total reads
30000000
Reads aligned (%)
89.3
Duplicates removed (%)
23.0
Number of peaks
370 (qval < 1E-05)
Base call quality data from
DBCLS SRA