Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
PC3-FLAG_MED25
cell line
retrovirally-infected PC3 cells
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RIPA lysis with sonication NEBNext® ChIP-Seq Library Prep Master Mix Set for Illumina.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
32446921
Reads aligned (%)
98.2
Duplicates removed (%)
4.4
Number of peaks
820 (qval < 1E-05)

hg19

Number of total reads
32446921
Reads aligned (%)
97.4
Duplicates removed (%)
5.8
Number of peaks
1022 (qval < 1E-05)

Base call quality data from DBCLS SRA