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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ETV4
wikigenes
PDBj
CellType: PC-3
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX6371922
GSM3908707: PC3-FLAG MED25 ETV4 ChIPSeq rep2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ETV4
Cell type
Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
PC3-FLAG_MED25
cell line
retrovirally-infected PC3 cells
chip antibody
anti-ETV4 (Aviva Systems Biology, ARP32262)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RIPA lysis with sonication; ChIP isolation of DNA NEBNext® ChIP-Seq Library Prep Master Mix Set for Illumina.
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
34180510
Reads aligned (%)
89.8
Duplicates removed (%)
7.8
Number of peaks
1283 (qval < 1E-05)
hg38
Number of total reads
34180510
Reads aligned (%)
92.6
Duplicates removed (%)
5.7
Number of peaks
1108 (qval < 1E-05)
Base call quality data from
DBCLS SRA