SRX6371922
GSM3908707: PC3-FLAG MED25 ETV4 ChIPSeq rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ETV4

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
PC3-FLAG_MED25
cell line
retrovirally-infected PC3 cells
chip antibody
anti-ETV4 (Aviva Systems Biology, ARP32262)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RIPA lysis with sonication; ChIP isolation of DNA NEBNext® ChIP-Seq Library Prep Master Mix Set for Illumina.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
34180510
Reads aligned (%)
89.8
Duplicates removed (%)
7.8
Number of peaks
1283 (qval < 1E-05)

hg38

Number of total reads
34180510
Reads aligned (%)
92.6
Duplicates removed (%)
5.7
Number of peaks
1108 (qval < 1E-05)

Base call quality data from DBCLS SRA