Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ETV4
wikigenes
PDBj
CellType: PC-3
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX6371922
GSM3908707: PC3-FLAG MED25 ETV4 ChIPSeq rep2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ETV4
Cell type
Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
PC3-FLAG_MED25
cell line
retrovirally-infected PC3 cells
chip antibody
anti-ETV4 (Aviva Systems Biology, ARP32262)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RIPA lysis with sonication; ChIP isolation of DNA NEBNext® ChIP-Seq Library Prep Master Mix Set for Illumina.
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
34180510
Reads aligned (%)
98.2
Duplicates removed (%)
5.7
Number of peaks
1108 (qval < 1E-05)
hg19
Number of total reads
34180510
Reads aligned (%)
97.3
Duplicates removed (%)
7.8
Number of peaks
1283 (qval < 1E-05)
Base call quality data from
DBCLS SRA