Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Thyroid carcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
thyroid carcinoma
tissue
thyroid carcinoma
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were obtained with lysis buffer and subjected to sonication. DNA-histone complexes were isolated with antibody. Libraries were prepared according to the protocol of VAHTSTM Universal DNA Library Prep Kit for Illumina® V3.

Sequencing Platform

instrument_model
Illumina HiSeq X Ten

hg38

Number of total reads
43834032
Reads aligned (%)
79.9
Duplicates removed (%)
12.7
Number of peaks
1696 (qval < 1E-05)

hg19

Number of total reads
43834032
Reads aligned (%)
78.7
Duplicates removed (%)
13.1
Number of peaks
571 (qval < 1E-05)

Base call quality data from DBCLS SRA