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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Thyroid carcinoma
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX6367746
GSM3905976: input-DNA 1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Others
Cell type
Thyroid carcinoma
NA
NA
Attributes by original data submitter
Sample
source_name
thyroid carcinoma
tissue
thyroid carcinoma
chip antibody
none
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were obtained with lysis buffer and subjected to sonication. DNA-histone complexes were isolated with antibody. Libraries were prepared according to the protocol of VAHTSTM Universal DNA Library Prep Kit for Illumina® V3.
Sequencing Platform
instrument_model
Illumina HiSeq X Ten
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
43834032
Reads aligned (%)
79.9
Duplicates removed (%)
12.7
Number of peaks
1696 (qval < 1E-05)
hg19
Number of total reads
43834032
Reads aligned (%)
78.7
Duplicates removed (%)
13.1
Number of peaks
571 (qval < 1E-05)
Base call quality data from
DBCLS SRA