Antigen

Antigen Class

TFs and others

Antigen

SPI1

Cell type

Cell type Class

Blood

Cell type

Dendritic Cells

MeSH Description

ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Sample

source_name

Dendritic cells

cell type

Monocyte-derived denditric cells

chip antibody

PU.1 SC-352 from SantaCruz

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Chromatine was isolated, fragmented by sonication and immunoprecipitate it with anti PU1 antibody Libraries were prepared according to Illumina's instructions using the Truseq ChIP-seq protocol.

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

50256820

Reads aligned (%)

98.1

Duplicates removed (%)

8.6

Number of peaks

84072 (qval < 1E-05)

hg19

Number of total reads

50256820

Reads aligned (%)

97.2

Duplicates removed (%)

9.7

Number of peaks

83493 (qval < 1E-05)