Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
Dendritic Cells
MeSH Description
ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Attributes by original data submitter

Sample

source_name
Dendritic cells
cell type
Monocyte-derived denditric cells
chip antibody
PU.1 SC-352 from SantaCruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatine was isolated, fragmented by sonication and immunoprecipitate it with anti PU1 antibody Libraries were prepared according to Illumina's instructions using the Truseq ChIP-seq protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
50256820
Reads aligned (%)
87.8
Duplicates removed (%)
9.7
Number of peaks
83493 (qval < 1E-05)

hg38

Number of total reads
50256820
Reads aligned (%)
89.6
Duplicates removed (%)
8.6
Number of peaks
84072 (qval < 1E-05)

Base call quality data from DBCLS SRA