Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 fetal lung fibroblasts
cell line
IMR90
treatment
Nutlin-3a (5uM final, 6hrs)
passages
30-35
antibody
p53 (EMD Millipore (DO1))

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
91507866
Reads aligned (%)
63.1
Duplicates removed (%)
24.2
Number of peaks
4140 (qval < 1E-05)

hg38

Number of total reads
91507866
Reads aligned (%)
64.9
Duplicates removed (%)
22.7
Number of peaks
4256 (qval < 1E-05)

Base call quality data from DBCLS SRA