Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
HBL-1
Primary Tissue
Blood
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Lymphoma

Attributes by original data submitter

Sample

isolate
Not applicable
age
Missing
biomaterial_provider
Louis M. Staudt
sex
Missing
tissue
Peripheral blood
cell_line
HBL1
treatment
HBL1 RNA Pol2, JQ1 500 nM, 3h

Sequenced DNA Library

library_name
HBL1_Pol2_JQ1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
36327847
Reads aligned (%)
81.4
Duplicates removed (%)
38.6
Number of peaks
24420 (qval < 1E-05)

hg19

Number of total reads
36327847
Reads aligned (%)
80.2
Duplicates removed (%)
38.1
Number of peaks
24487 (qval < 1E-05)

Base call quality data from DBCLS SRA