SRX620441
HBL1 RNA Pol2, DMSO

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
HBL-1
Primary Tissue
Blood
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Lymphoma

Attributes by original data submitter

Sample

isolate
Not applicable
age
Missing
biomaterial_provider
Louis M. Staudt
sex
Missing
tissue
Peripheral blood
cell_line
HBL1
treatment
HBL1 RNA Pol2, DMSO

Sequenced DNA Library

library_name
HBL1_Pol2_DMSO
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24672271
Reads aligned (%)
78.7
Duplicates removed (%)
36.5
Number of peaks
25169 (qval < 1E-05)

hg19

Number of total reads
24672271
Reads aligned (%)
77.5
Duplicates removed (%)
35.9
Number of peaks
25562 (qval < 1E-05)

Base call quality data from DBCLS SRA