Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD3

Cell type

Cell type Class
Liver
Cell type
LX2
NA
NA

Attributes by original data submitter

Sample

source_name
human LX2 cells
cell type
human hepatic stellate cells
cell line
LX-2
chip antibody
BRD3
treatment
JQ1 (500nM)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
7601682
Reads aligned (%)
84.3
Duplicates removed (%)
8.4
Number of peaks
975 (qval < 1E-05)

hg38

Number of total reads
7601682
Reads aligned (%)
87.6
Duplicates removed (%)
5.9
Number of peaks
925 (qval < 1E-05)

Base call quality data from DBCLS SRA