SRX610814
GSM1415924: Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NTERA-2
Primary Tissue
Testis
Site of Extraction
lung
Tissue Diagnosis
Carcinoma, Embryonal

Attributes by original data submitter

Sample

source_name
NTERA2
cell line
NTERA2 pluripotent stem cell line
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sheared chromatin was pulled down by SRA probes or p68 antibody. Library was prepared using MicroPlex Library Preparation kit (Diagenode, C05010010).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
833558960
Reads aligned (%)
68.4
Duplicates removed (%)
14.4
Number of peaks
149199 (qval < 1E-05)

hg19

Number of total reads
833558960
Reads aligned (%)
67.6
Duplicates removed (%)
15.5
Number of peaks
107724 (qval < 1E-05)

Base call quality data from DBCLS SRA