Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
DDX5

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NTERA-2
Primary Tissue
Testis
Site of Extraction
lung
Tissue Diagnosis
Carcinoma, Embryonal

Attributes by original data submitter

Sample

source_name
NTERA2
cell line
NTERA2 pluripotent stem cell line
chip antibody
p68 antibody (Bethyl Laboratories, catalog# A300-523A, lot# A300-523A-1)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
815564210
Reads aligned (%)
70.2
Duplicates removed (%)
71.0
Number of peaks
807639 (qval < 1E-05)

hg19

Number of total reads
815564210
Reads aligned (%)
69.6
Duplicates removed (%)
72.0
Number of peaks
796659 (qval < 1E-05)

Base call quality data from DBCLS SRA