Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
DDX5

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NTERA-2
Primary Tissue
Testis
Site of Extraction
lung
Tissue Diagnosis
Carcinoma, Embryonal

Attributes by original data submitter

Sample

source_name
NTERA2
cell line
NTERA2 pluripotent stem cell line
chip antibody
p68 antibody (Bethyl Laboratories, catalog# A300-523A, lot# A300-523A-1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sheared chromatin was pulled down by SRA probes or p68 antibody. Library was prepared using MicroPlex Library Preparation kit (Diagenode, C05010010).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
815564210
Reads aligned (%)
19.5
Duplicates removed (%)
72.0
Number of peaks
796659 (qval < 1E-05)

hg38

Number of total reads
815564210
Reads aligned (%)
20.4
Duplicates removed (%)
71.0
Number of peaks
807639 (qval < 1E-05)

Base call quality data from DBCLS SRA