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For hg38
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For hg19
BigWig
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: DKO-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX610768
GSM1415883: DKO1-H3K4me1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Digestive tract
Cell type
DKO-1
NA
NA
Attributes by original data submitter
Sample
source_name
DKO1 cells
cell line
DKO1
cell type
colon cancer cell line; DNMT3B & DNM1 KO
Sex
male
chip antibody
anti-H3K4me1 (Active Motif #39297)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed and nuclei were sonicated. Histone-DNA complexes were isolated with target antibody. Libraries were prepared according to Illumina's recommendation from 20ng ChIP'ed DNA and indexed prior to sequencing on HiSeq2000 using 50SR cycles
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
48569302
Reads aligned (%)
65.9
Duplicates removed (%)
67.4
Number of peaks
2902 (qval < 1E-05)
hg19
Number of total reads
48569302
Reads aligned (%)
65.7
Duplicates removed (%)
67.9
Number of peaks
2937 (qval < 1E-05)
Base call quality data from
DBCLS SRA