Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Adipocyte
Cell type
Visceral adipose tissue
NA
NA

Attributes by original data submitter

Sample

source_name
visceral adipose tissue
strain
C57BL/6
tissue
visceral (epididymal) white adipose tissue (VWAT)
age
26 weeks old
diet
Control chow diet (D12450J)
time
20 weeks
replicate
2
chip antibody
H3K4me1 (Abcam, ab8895)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
54627485
Reads aligned (%)
97.7
Duplicates removed (%)
10.1
Number of peaks
418 (qval < 1E-05)

mm9

Number of total reads
54627485
Reads aligned (%)
97.6
Duplicates removed (%)
10.2
Number of peaks
396 (qval < 1E-05)

Base call quality data from DBCLS SRA