SRX6069699
GSM3890826: vWAT, 8 weeks, H3K27ac, high fat diet, rep 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Adipocyte
Cell type
Visceral adipose tissue
NA
NA

Attributes by original data submitter

Sample

source_name
visceral adipose tissue
strain
C57BL/6
tissue
visceral (epididymal) white adipose tissue (VWAT)
age
14 weeks old
diet
High fat diet (D12492)
time
8 weeks
replicate
1
chip antibody
H3K27ac (Abcam, ab4729)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
57613499
Reads aligned (%)
96.2
Duplicates removed (%)
13.0
Number of peaks
22554 (qval < 1E-05)

mm9

Number of total reads
57613499
Reads aligned (%)
96.2
Duplicates removed (%)
13.0
Number of peaks
22559 (qval < 1E-05)

Base call quality data from DBCLS SRA