Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PGR

Cell type

Cell type Class
Uterus
Cell type
Endometrium
MeSH Description
The mucous membrane lining of the uterine cavity that is hormonally responsive during the MENSTRUAL CYCLE and PREGNANCY. The endometrium undergoes cyclic changes that characterize MENSTRUATION. After successful FERTILIZATION, it serves to sustain the developing embryo.

Attributes by original data submitter

Sample

source_name
Midsecretory rep2 PGR-ChIPseq
menstrual cycle phase
mid-secretory
tissue
endometrium/whole endometrium
chip antibody
Progesterone Receptor (Santa Cruz, sc-7208)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and PGR-bound DNA were isolated with PGR antibody. True Seq RNA kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
40415205
Reads aligned (%)
65.7
Duplicates removed (%)
32.6
Number of peaks
30536 (qval < 1E-05)

hg38

Number of total reads
40415205
Reads aligned (%)
66.4
Duplicates removed (%)
32.2
Number of peaks
30641 (qval < 1E-05)

Base call quality data from DBCLS SRA