Antigen

Antigen Class

TFs and others

Antigen

PGR

Cell type

Cell type Class

Uterus

Cell type

Endometrium

MeSH Description

The mucous membrane lining of the uterine cavity that is hormonally responsive during the MENSTRUAL CYCLE and PREGNANCY. The endometrium undergoes cyclic changes that characterize MENSTRUATION. After successful FERTILIZATION, it serves to sustain the developing embryo.

Sample

source_name

Proliferative rep2 PGR-ChIPseq

menstrual cycle phase

proliferative

tissue

endometrium/whole endometrium

chip antibody

Progesterone Receptor (Santa Cruz, sc-7208)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and PGR-bound DNA were isolated with PGR antibody. True Seq RNA kit

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

40881459

Reads aligned (%)

97.5

Duplicates removed (%)

45.0

Number of peaks

12091 (qval < 1E-05)

hg19

Number of total reads

40881459

Reads aligned (%)

97.1

Duplicates removed (%)

45.8

Number of peaks

11935 (qval < 1E-05)