SRX6068031
GSM3889362: EFKD histone input rep3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Bone
Cell type
A-673
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
Rhabdomyosarcoma

Attributes by original data submitter

Sample

source_name
A673 cells
cell line
A673
transduced shrna
iEF
antibody
None
replicate
3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Histone ChIP NEBNext

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33560058
Reads aligned (%)
97.5
Duplicates removed (%)
3.2
Number of peaks
502 (qval < 1E-05)

hg19

Number of total reads
33560058
Reads aligned (%)
96.8
Duplicates removed (%)
4.8
Number of peaks
589 (qval < 1E-05)

Base call quality data from DBCLS SRA