Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Esophageal adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
Esophageal Adenocarcinoma tissue
cell line
EAC-T5
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
29790548
Reads aligned (%)
97.2
Duplicates removed (%)
4.1
Number of peaks
901 (qval < 1E-05)

hg19

Number of total reads
29790548
Reads aligned (%)
96.0
Duplicates removed (%)
4.2
Number of peaks
376 (qval < 1E-05)

Base call quality data from DBCLS SRA