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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Esophageal adenocarcinoma
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX6061003
GSM3886326: EAC-T2 INPUT; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Digestive tract
Cell type
Esophageal adenocarcinoma
NA
NA
Attributes by original data submitter
Sample
source_name
Esophageal Adenocarcinoma tissue
cell line
EAC-T2
antibody
none
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
22875775
Reads aligned (%)
94.3
Duplicates removed (%)
4.6
Number of peaks
528 (qval < 1E-05)
hg19
Number of total reads
22875775
Reads aligned (%)
93.3
Duplicates removed (%)
4.7
Number of peaks
269 (qval < 1E-05)
Base call quality data from
DBCLS SRA