SRX6060995
GSM3886318: SKGT4 INPUT; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
SK-GT-4
NA
NA

Attributes by original data submitter

Sample

source_name
Esophageal Adenocarcinoma cell line
cell line
SKGT4
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28634957
Reads aligned (%)
99.0
Duplicates removed (%)
5.4
Number of peaks
992 (qval < 1E-05)

hg19

Number of total reads
28634957
Reads aligned (%)
98.3
Duplicates removed (%)
6.7
Number of peaks
957 (qval < 1E-05)

Base call quality data from DBCLS SRA