Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
KYAE-1
NA
NA

Attributes by original data submitter

Sample

source_name
Esophageal Adenocarcinoma cell line
cell line
KYAE1
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
11761385
Reads aligned (%)
84.5
Duplicates removed (%)
2.5
Number of peaks
295 (qval < 1E-05)

hg19

Number of total reads
11761385
Reads aligned (%)
83.6
Duplicates removed (%)
2.5
Number of peaks
147 (qval < 1E-05)

Base call quality data from DBCLS SRA