Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
JH-EsoAd1
NA
NA

Attributes by original data submitter

Sample

source_name
Esophageal Adenocarcinoma cell line
cell line
JH-EsoAd1
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
26787641
Reads aligned (%)
98.1
Duplicates removed (%)
6.9
Number of peaks
873 (qval < 1E-05)

hg19

Number of total reads
26787641
Reads aligned (%)
97.2
Duplicates removed (%)
8.0
Number of peaks
942 (qval < 1E-05)

Base call quality data from DBCLS SRA