SRX6060975
GSM3886298: Eso26 ELF3-Flag; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ELF3

Cell type

Cell type Class
Digestive tract
Cell type
ESO-26
NA
NA

Attributes by original data submitter

Sample

source_name
Esophageal Adenocarcinoma cell line
cell line
Eso26
antibody
ELF3-Flag

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
15956741
Reads aligned (%)
161.5
Duplicates removed (%)
4.8
Number of peaks
1300 (qval < 1E-05)

hg38

Number of total reads
15956741
Reads aligned (%)
163.0
Duplicates removed (%)
4.8
Number of peaks
1440 (qval < 1E-05)

Base call quality data from DBCLS SRA