Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MEF2D

Cell type

Cell type Class
Uterus
Cell type
SK-UT-1
Primary Tissue
Uterus
Tissue Diagnosis
Leiomyosarcoma

Attributes by original data submitter

Sample

source_name
SK-UT-1
cell type
Leiomyosarcoma cells
passages
below 20
strain
na
chip antibody
MEF2D (BD Biosciences, clone 9 610775)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
63931863
Reads aligned (%)
94.4
Duplicates removed (%)
34.5
Number of peaks
1704 (qval < 1E-05)

hg19

Number of total reads
63931863
Reads aligned (%)
93.5
Duplicates removed (%)
35.8
Number of peaks
1117 (qval < 1E-05)

Base call quality data from DBCLS SRA