SRX6035756
GSM3872479: ALL-2nd-free-input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
primary cell
antibody target
None
primary antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Fixed cells were lysed and histone-DNA complexes were isolated with antibodies. Libraries were prepared on the Illumina Next-Seq 500 platform.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33121750
Reads aligned (%)
95.9
Duplicates removed (%)
5.2
Number of peaks
564 (qval < 1E-05)

hg19

Number of total reads
33121750
Reads aligned (%)
95.2
Duplicates removed (%)
6.8
Number of peaks
561 (qval < 1E-05)

Base call quality data from DBCLS SRA