Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
primary cell
antibody target
None
primary antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Fixed cells were lysed and histone-DNA complexes were isolated with antibodies. Libraries were prepared on the Illumina Next-Seq 500 platform.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
29830342
Reads aligned (%)
98.9
Duplicates removed (%)
5.3
Number of peaks
584 (qval < 1E-05)

hg19

Number of total reads
29830342
Reads aligned (%)
98.0
Duplicates removed (%)
6.7
Number of peaks
540 (qval < 1E-05)

Base call quality data from DBCLS SRA