SRX6035744
GSM3872467: THP1-GABA-input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
Immortal cell line
cell line
THP-1
antibody target
None
primary antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Fixed cells were lysed and histone-DNA complexes were isolated with antibodies. Libraries were prepared on the Illumina Next-Seq 500 platform.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48232010
Reads aligned (%)
90.1
Duplicates removed (%)
23.6
Number of peaks
178341 (qval < 1E-05)

hg19

Number of total reads
48232010
Reads aligned (%)
89.0
Duplicates removed (%)
26.4
Number of peaks
179262 (qval < 1E-05)

Base call quality data from DBCLS SRA