Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT116 colon cancer cell line
cell line
HCT116
antibody
p53
treatment
5FU for 0h

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were sonicated and p53 binding sites were isolated with antibody (SC- 6243) RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
48597592
Reads aligned (%)
97.8
Duplicates removed (%)
11.5
Number of peaks
1150 (qval < 1E-05)

hg19

Number of total reads
48597592
Reads aligned (%)
97.1
Duplicates removed (%)
12.7
Number of peaks
1351 (qval < 1E-05)

Base call quality data from DBCLS SRA