Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCA4

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Human lung (carcinoma) cell line
cell line
A549
antibody
BRG1
genotype/variation
SMARCA4+/+

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
https://www.nature.com/articles/nprot.2018.015 Low-input single-stranded library construction protocol as per PMIDs 23493070 & 26771485

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
12357414
Reads aligned (%)
146.2
Duplicates removed (%)
21.9
Number of peaks
21639 (qval < 1E-05)

hg38

Number of total reads
12357414
Reads aligned (%)
147.6
Duplicates removed (%)
21.6
Number of peaks
21834 (qval < 1E-05)

Base call quality data from DBCLS SRA