SRX597164
Mouse AER and ZPA ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

strain
B6
age
E11.5
biomaterial_provider
Ahituv
sex
not applicable
tissue
limb buds

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
84106082
Reads aligned (%)
97.2
Duplicates removed (%)
51.2
Number of peaks
2837 (qval < 1E-05)

mm9

Number of total reads
84106082
Reads aligned (%)
97.0
Duplicates removed (%)
51.2
Number of peaks
2793 (qval < 1E-05)

Base call quality data from DBCLS SRA