Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1
cell type
human embryonic stem cells
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was digested by micrococcal nuclease. Input DNA was purified following digestion. Chromatin was end-repaired, poly-adenylated, Y adaptor-ligated, and PCR-amplified.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
38461360
Reads aligned (%)
95.5
Duplicates removed (%)
13.3
Number of peaks
431 (qval < 1E-05)

hg19

Number of total reads
38461360
Reads aligned (%)
94.8
Duplicates removed (%)
14.2
Number of peaks
443 (qval < 1E-05)

Base call quality data from DBCLS SRA