Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cell line
Cell type
OSC
Tissue Source
ovary
Developmental Stage
adult stage

Attributes by original data submitter

Sample

source_name
Panx-KD OSC
cell type
Ovarian Somatic Cells (OSC)
variation
RNAi Panx
chip/clip antibody
anti-H3K9me3 antibody (61013, Active motif)
molecule subtype
genomic DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina MiSeq

dm6

Number of total reads
3949613
Reads aligned (%)
86.5
Duplicates removed (%)
17.4
Number of peaks
2533 (qval < 1E-05)

dm3

Number of total reads
3949613
Reads aligned (%)
87.9
Duplicates removed (%)
8.7
Number of peaks
5255 (qval < 1E-05)

Base call quality data from DBCLS SRA