SRX5931377
GSM3831475: ChIP-seq input from Nxf2-KD; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cell line
Cell type
OSC
Tissue Source
ovary
Developmental Stage
adult stage

Attributes by original data submitter

Sample

source_name
Nxf2-KD OSC
cell type
Ovarian Somatic Cells (OSC)
variation
RNAi Nxf2
chip/clip antibody
--
molecule subtype
genomic DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
2698874
Reads aligned (%)
81.2
Duplicates removed (%)
4.3
Number of peaks
986 (qval < 1E-05)

dm3

Number of total reads
2698874
Reads aligned (%)
82.0
Duplicates removed (%)
3.4
Number of peaks
376 (qval < 1E-05)

Base call quality data from DBCLS SRA