Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX8

Cell type

Cell type Class
Muscle
Cell type
RH-4
NA
NA

Attributes by original data submitter

Sample

source_name
RH4
antibody
SOX8 (Abcam, ab104245)
enrichment target
SOX8
target function
Transcription Factor
treatment
Entinostat

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted from ChIP-seq samples prepared following the Active Motif ChIP-IT High Sensitivity kit protocol. Standard Illumina barcodes were introduced during library preparation

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
41241177
Reads aligned (%)
54.8
Duplicates removed (%)
42.4
Number of peaks
2060 (qval < 1E-05)

hg38

Number of total reads
41241177
Reads aligned (%)
57.3
Duplicates removed (%)
40.3
Number of peaks
2308 (qval < 1E-05)

Base call quality data from DBCLS SRA