Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX8

Cell type

Cell type Class
Muscle
Cell type
RH-4
NA
NA

Attributes by original data submitter

Sample

source_name
RH4
antibody
SOX8 (Abcam, ab104245)
enrichment target
SOX8
target function
Transcription Factor
treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted from ChIP-seq samples prepared following the Active Motif ChIP-IT High Sensitivity kit protocol. Standard Illumina barcodes were introduced during library preparation

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
37298706
Reads aligned (%)
12.5
Duplicates removed (%)
86.6
Number of peaks
1734 (qval < 1E-05)

hg38

Number of total reads
37298706
Reads aligned (%)
13.9
Duplicates removed (%)
85.2
Number of peaks
1789 (qval < 1E-05)

Base call quality data from DBCLS SRA