Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC3

Cell type

Cell type Class
Muscle
Cell type
RH-4
NA
NA

Attributes by original data submitter

Sample

source_name
RH4
antibody
HDAC3 (Abcam, ab7030)
enrichment target
HDAC3
target function
Epigenetic Enzyme
treatment
Entinostat

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted from ChIP-seq samples prepared following the Active Motif ChIP-IT High Sensitivity kit protocol. Standard Illumina barcodes were introduced during library preparation

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
21834120
Reads aligned (%)
85.7
Duplicates removed (%)
8.8
Number of peaks
11878 (qval < 1E-05)

hg38

Number of total reads
21834120
Reads aligned (%)
86.3
Duplicates removed (%)
8.5
Number of peaks
11899 (qval < 1E-05)

Base call quality data from DBCLS SRA