SRX5930140
GSM3831282: RH4 D6 HDAC3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC3

Cell type

Cell type Class
Muscle
Cell type
RH-4
NA
NA

Attributes by original data submitter

Sample

source_name
RH4
antibody
HDAC3 (Abcam, ab7030)
enrichment target
HDAC3
target function
Epigenetic Enzyme
treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted from ChIP-seq samples prepared following the Active Motif ChIP-IT High Sensitivity kit protocol. Standard Illumina barcodes were introduced during library preparation

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32833925
Reads aligned (%)
96.5
Duplicates removed (%)
6.5
Number of peaks
8207 (qval < 1E-05)

hg19

Number of total reads
32833925
Reads aligned (%)
96.0
Duplicates removed (%)
7.4
Number of peaks
8193 (qval < 1E-05)

Base call quality data from DBCLS SRA