Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEk293T
treatment
DMSO control
chip antibody
None (Input DNA)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sonicated and clarified lysate was incubated with ChIP-seq antibodies on magnetic beads to immunoprecipitate corresponding protein-DNA complexs Libraries were prepared using NEBNext Ultra II DNA library Prep Kit for Illumina E7645S with NEBNext Multiplex Oligos for Illumina (Index Primer Set 1) E7335S

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
43316808
Reads aligned (%)
98.2
Duplicates removed (%)
13.1
Number of peaks
881 (qval < 1E-05)

hg19

Number of total reads
43316808
Reads aligned (%)
97.8
Duplicates removed (%)
14.0
Number of peaks
906 (qval < 1E-05)

Base call quality data from DBCLS SRA