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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: EpiLC
ATCC
MeSH
RIKEN BRC
SRX590346
GSM1410414: dY-Foxd3CKO-Tam-H3K27me3 ChIP-rep2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Pluripotent stem cell
Cell type
EpiLC
NA
NA
Attributes by original data submitter
Sample
source_name
dY-Foxd3CKO-Tam-H3K27me3 ChIP
strain background
C57BL/6
genotype/variation
Foxd3 conditional knockout
cell type
EpiLC (dY cells); epiblast-like cells
cell line of origin
Foxd3 conditional knockout C57BL/6 ESCs
treatment
-Lif -2i day 3
chip antibody
H3K4me3
chip antibody vendor
Millipore
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
80917912
Reads aligned (%)
97.3
Duplicates removed (%)
29.5
Number of peaks
518 (qval < 1E-05)
mm9
Number of total reads
80917912
Reads aligned (%)
97.2
Duplicates removed (%)
29.5
Number of peaks
579 (qval < 1E-05)
Base call quality data from
DBCLS SRA