SRX590261
GSM1410329: R-IgG ChIP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
R-IgG ChIP
cell type
embryonic stem cells (ESCs; R cells)
cell line of origin
dual miRNA reporter V6.5 ESCs
treatment
Lif 2i
chip antibody
IgG (normal rabbit)
chip antibody vendor
Invitrogen

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
37383926
Reads aligned (%)
83.3
Duplicates removed (%)
65.3
Number of peaks
391 (qval < 1E-05)

mm9

Number of total reads
37383926
Reads aligned (%)
83.1
Duplicates removed (%)
65.5
Number of peaks
403 (qval < 1E-05)

Base call quality data from DBCLS SRA