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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: PGR
wikigenes
PDBj
CellType: ZR-75-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX589472
ZR-75-1 ChIP seq INPUT channel
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
PGR
Cell type
Cell type Class
Breast
Cell type
ZR-75-1
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal
Attributes by original data submitter
Sample
isolate
ZR-75-1
age
p18
biomaterial_provider
Grant Buchanan, Cancer Biology Group, The University of Adelaide, School of Medicine, Basil Hetzel Institute for Translational Health Research, 28 Woodville Rd, Woodville South SA 5011 Australia
sex
female
tissue
Breast
cell_line
ZR-75-1
cell_type
Breast Carcinoma
culture_collection
ATCC:CRL-1500
disease
Breast Cancer
sample_type
ChIP-sequencing
treatment
4h 10nM Progesterone
Antibody
PR H-190
Sequenced DNA Library
library_name
PR_P4_only
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
10483562
Reads aligned (%)
95.6
Duplicates removed (%)
24.1
Number of peaks
0 (qval < 1E-05)
hg19
Number of total reads
10483562
Reads aligned (%)
95.5
Duplicates removed (%)
24.2
Number of peaks
2 (qval < 1E-05)
Base call quality data from
DBCLS SRA