Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SNAI2

Cell type

Cell type Class
Lung
Cell type
PC-9
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
PC9
treatment
DMSO
cell line
PC9
cell type
Non-small cell lung cancer cell line
chip antibody
Slug (Cell signaling #9585)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
30346277
Reads aligned (%)
98.2
Duplicates removed (%)
10.2
Number of peaks
899 (qval < 1E-05)

hg19

Number of total reads
30346277
Reads aligned (%)
97.7
Duplicates removed (%)
11.4
Number of peaks
906 (qval < 1E-05)

Base call quality data from DBCLS SRA