Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Digestive tract
Cell type
DKO
NA
NA

Attributes by original data submitter

Sample

source_name
DKO_RAD21_ChIPSeq
cell line
DKO
tissue source
Colon
cell type
Colorectal carcinoma cell line
chip antibody
RAD21 (Santa Cruz #sc98784)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
60275998
Reads aligned (%)
74.6
Duplicates removed (%)
23.3
Number of peaks
45598 (qval < 1E-05)

hg38

Number of total reads
60275998
Reads aligned (%)
76.2
Duplicates removed (%)
22.1
Number of peaks
45155 (qval < 1E-05)

Base call quality data from DBCLS SRA