Curated Sample Data


Genome
mm9
Antigen Class
Input control
Antigen
Input control
Cell type Class
Blood
Cell type
Hematopoietic Stem Cells

Cell type information


MeSH Description
Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Attributes by Original Data Submitter


source_name
Hoxa9/Meis1-transformed HSCs_input
strain background
C57B6
tissue
bone marrow
cell type
hematopoietic progenitor cells
transduced with
MIGR1-HA-Hoxa9 and MIGR1-Flag-Meis1
chip antibody
none

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated cells and histone-DNA complexes were isolated with antibody. Immunoprecipitated chromatin was RNase treated and column purified. Libraries were generated using Illumina ChIP-seq Library Preparation Kit

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
54768760
Reads aligned (%)
75.2
Duplicates removed (%)
15.7
Number of peaks
622 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA